Source code for pyvbmc.vbmc.options

# for annotating Options as input of itself
from __future__ import annotations

import configparser
import copy
from collections.abc import MutableMapping
from math import ceil
from pathlib import Path
from textwrap import indent

import numpy as np

from pyvbmc.acquisition_functions import *
from pyvbmc.formatting import full_repr


[docs] class Options(MutableMapping, dict): """ This class is responsible for Options. Parameters ---------- default_options_path : str The path to the default options. May be absolute or relative to this directory. evaluation_parameters : dict Parameters used to evaluate the options. user_options : dict User defined values to overwrite default options. Attributes ---------- useroptions : set This set contains all options that have set by the user, if there are none it is empty. These ``useroptions`` are immutable to changes using :py:meth:`load_options_file`. """ def __init__( self, default_options_path: str, evaluation_parameters: dict = None, user_options: dict = None, ): """ Initialize the options using default options and specified options from the user. """ # Flag initialization as in-progress # (completed in self.validate_option_names) self.is_initialized = False super().__init__() self.descriptions = {} self["useroptions"] = set() self.default_options_path = default_options_path self.evaluation_parameters = evaluation_parameters self.user_options = user_options # load options from file self.load_options_file(default_options_path, evaluation_parameters) # User options if user_options is not None: self.update(user_options) self["useroptions"].update(user_options.keys())
[docs] def update_defaults(self): """Change defaults as needed based on values of other options.""" if self.get("specify_target_noise"): updates = { "max_fun_evals": ceil(self["max_fun_evals"] * 1.5), "tol_stable_count": ceil(self["tol_stable_count"] * 1.5), "active_sample_gp_update": True, "active_sample_vp_update": True, "search_acq_fcn": [AcqFcnVIQR()], } for key, val in updates.items(): if key not in self["useroptions"]: self[key] = val
[docs] @classmethod def init_from_existing_options( cls, default_options_path: str, evaluation_parameters: dict = None, other: Options = None, ): """ Initialize an options instance using default options and another options instance. Only the user-definied options from the other object will overwrite the default options. Everything else will come from the default options. Parameters ---------- default_options_path : str The path to the default options. May be absolute or relative to this directory. evaluation_parameters : dict Parameters used to evaluate the options. other : Options User defined values to overwrite default options. Returns ------- new_options : Options The new options object with the values merged as described above. """ if other is None: user_options = None else: user_option_keys = other.get("useroptions") user_options = {k: other.get(k) for k in user_option_keys} new_options = cls( default_options_path, evaluation_parameters, user_options ) return new_options
[docs] def load_options_file( self, options_path: str, evaluation_parameters: dict = None ): """ Load options from an ini file and evaluate them using the specified ``evaluation_parameters``. Note that strings starting with # in the .ini file act as description to the option in the following line. Parameters ---------- options_path : str The path to an ``options.ini`` file that should be loaded. May be absolute or relative to this directory. evaluation_parameters : dict, optional Parameters used to evaluate the options. """ options_list = _read_config_file(options_path) for (key, value, description) in options_list: if key not in self.get("useroptions") and key != "useroptions": self[key] = eval(value, globals(), evaluation_parameters) self.descriptions[key] = description
[docs] def validate_option_names(self, options_paths: list): """ Check that ini files specified by the list of ``options_paths`` contain the option names from this options object at least once. Note that this method checks not if there are option names in files that are not in the object. After option names are validated, initialization is flagged as complete and `self.is_initialized` is set to `True` to prevent further modification of options. Parameters ---------- options_paths : list of str A list of paths to ini files can contain the allowed option names. Raises ------ ValueError Raised when an option exists in this object but not in one of the specified ini files. """ # create set of option names from all ini files file_option_names = set() for options_path in options_paths: file_option_names.update( _read_config_file(options_path)[:, 0].flatten() ) for key in self.keys(): if key != "useroptions" and key not in file_option_names: raise ValueError("The option {} does not exist.".format(key)) # After initialzation is complete prevent changes to options: self.is_initialized = True
def __setitem__(self, key, val, force=False): # Prevent user from attempting to modify options after initialization if ( hasattr(self, "is_initialized") and self.is_initialized and not force ): raise AttributeError( "Warning: Cannot set options after initialization. Please re-initialize with `options = {...}`" ) else: dict.__setitem__(self, key, val) def __getitem__(self, key): return dict.__getitem__(self, key) def __iter__(self): yield from sorted(dict.__iter__(self)) def __len__(self): return dict.__len__(self) def __delitem__(self, key): return dict.__delitem__(self, key) def __copy__(self): cls = self.__class__ result = cls.__new__(cls) # Copy class properties: result.__dict__.update(self.__dict__) # Copy options dict: for k, v in dict.items(self): result.__setitem__(k, v, force=True) return result def __deepcopy__(self, memo): cls = self.__class__ result = cls.__new__(cls) # Avoid infinite recursion in deepcopy memo[id(self)] = result # Copy class properties: for k, v in self.__dict__.items(): setattr(result, k, copy.deepcopy(v, memo)) # Copy options dict: for k, v in dict.items(self): result.__setitem__(k, copy.deepcopy(v, memo), force=True) return result
[docs] def eval(self, key: str, evaluation_parameters: dict): """ Evaluate an option using `evaluation_parameters` if it is a callable, otherwise return the value of the option. Parameters ---------- key : str The name of the option. evaluation_parameters : dict Parameters for the options in case it is a callable. These have to match the key arguments of the callable and are ignored if it is not a callable. Returns ------- val : object Value of the object which has been evaluated if it is a callable. """ if callable(self.get(key)): return self.get(key)(**evaluation_parameters) else: return self.get(key)
def __str__(self): """ Return the user options in a format key: value (description). Returns ------- str The str to describe an options object. """ user_options = "\n".join( [ f"{key}: {self[key]} ({self.descriptions.get(key)})" for key in self["useroptions"] ] ) if user_options == "": user_options = ( "None (use default options).\n" + "View current defaults with `options` or `repr(options)`." ) return "User Options:\n" + indent(user_options, " ") def __repr__(self, full=False, expand=False): """ Return the options in a format key: value (description). Returns ------- string : str The str to describe the Options object. full : bool, optional If ``full`` is `False`, print only the relevant object attributes. Otherwise print all attributes. expand : bool, optional If ``expand`` is `False`, then describe any complex child attributes of the object by their name and memory location. Otherwise, recursively expand the child attributes into their own representations. Default `False`. """ if full: # Output every class attribute (for debugging) return full_repr(self, "Options", expand=expand) else: # Output relevant class attributes in meaningful format return "Options:\n" + indent( "\n".join( [ f"{key}: {value} ({self.descriptions.get(key)})" for (key, value) in self.items() ] ), " ", )
def _read_config_file(options_path: str): """ Private helper method to read a config file and return the options as a list of tuples (key, value, description). Note that strings starting with # in the .ini file act as description to the option in the following line. """ path = Path(options_path) if not path.is_absolute(): path = Path(__file__).parent.joinpath(path) if not path.exists(): raise ValueError(f"{path.resolve()} does not exist.") conf = configparser.ConfigParser(comment_prefixes="", allow_no_value=True) # do not lower() both values as well as descriptions conf.optionxform = str conf.read(path) option_list = [] description = "" for section in conf.sections(): for (key, value) in conf.items(section): if "#" in key: description = key.strip("# ") else: option_list.append([key, value, description]) description = "" if len(option_list) == 0: raise ValueError( "The option file at {} does not contain options.".format( options_path ) ) return np.array(option_list)